Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP056326 |
SRS876854 |
SRX959729 |
SRR1919454 |
Feces |
A/J |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2013-05-29 |
USA |
Female |
10 |
Adult |
V4 |
|
|
78947 |
9127 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
880 |
99.89 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 926.13 |
894.39 |
966.00 |
4.04 |
0.04 |
4.05 |
749 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
