Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP056326 |
SRS876842 |
SRX959740 |
SRR1919465 |
Feces |
C57BL/6 |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2013-05-29 |
USA |
Female |
10 |
Adult |
V4 |
|
|
77608 |
9471 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
991 |
99.83 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 1065.58 |
1018.47 |
1122.00 |
3.96 |
0.05 |
3.98 |
790 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
