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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876833 SRX959751 SRR1919476 Feces C57BL/6 The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-29 USA Female 10 Adult V4 85068 8361

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 824 99.90

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
867.22 835.78 907.00 3.04 0.14 3.06 596

Rarefaction curve

Rank abundance curve

Bacterial Composition