Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876823 SRX959760 SRR1919485 Feces BALB/c Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-29 USA Female 10 Adult V4 80706 8935

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 848 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
884.35 856.88 922.00 3.96 0.04 3.98 586

Rarefaction curve

Rank abundance curve

Bacterial Composition