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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876821 SRX959766 SRR1919491 Feces BALB/c The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-29 USA Female 10 Adult V4 85016 8827

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 753 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
796.90 766.00 832.00 3.37 0.10 3.38 570

Rarefaction curve

Rank abundance curve

Bacterial Composition