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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876818 SRX959763 SRR1919488 Feces BALB/c The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-29 USA Female 10 Adult V4 82056 8238

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 800 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
838.72 809.22 875.00 3.13 0.14 3.15 552

Rarefaction curve

Rank abundance curve

Bacterial Composition