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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876808 SRX959775 SRR1919500 Feces C57BL/6 Harlan Sprague Dawley Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-09-04 USA Female 24 Adult V4 78432 9403

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 1120 99.85

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
1183.16 1145.32 1237.00 4.62 0.03 4.64 908

Rarefaction curve

Rank abundance curve

Bacterial Composition