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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876775 SRX959808 SRR1919533 Feces A/J Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-09-04 USA Female 24 Adult V4 81357 9454

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 882 99.90

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
921.87 896.33 961.00 4.50 0.03 4.52 803

Rarefaction curve

Rank abundance curve

Bacterial Composition