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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876774 SRX959809 SRR1919534 Feces A/J Harlan Sprague Dawley Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-09-04 USA Female 24 Adult V4 82080 9415

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 867 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
904.03 877.56 939.00 4.70 0.02 4.72 787

Rarefaction curve

Rank abundance curve

Bacterial Composition