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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP230331 SRS5679024 SRX7172356 SRR10482709 Cecum C57BL/6 Charles River Laboratories Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Female V4 4593 8054

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 214 99.22

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
237.97 233.09 250.00 4.13 0.04 4.17 370

Rarefaction curve

Rank abundance curve

Bacterial Composition