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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP125798 SRS2719327 SRX3427898 SRR6328390 Feces C57BL/6 Charles River Laboratories Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2016-04-22 Female 8 Adult V4 23835 7813

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 217 99.94

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
222.28 220.39 232.00 2.81 0.13 2.82 311

Rarefaction curve

Rank abundance curve

Bacterial Composition