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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP125798 SRS2719326 SRX3427897 SRR6328391 Feces C57BL/6 Charles River Laboratories Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2016-04-22 Female 8 Adult V4 21098 8880

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 283 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
289.75 287.37 301.00 3.50 0.07 3.51 437

Rarefaction curve

Rank abundance curve

Bacterial Composition