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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP145069 SRS2529852 SRX3203489 SRR6056615 Colon C57BL/6 Janvier Labs Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015 Netherlands Male Aged V4 |Location:Lumen| 27686 8702

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 514 99.83

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
535.53 519.95 560.00 3.39 0.09 3.42 489

Rarefaction curve

Rank abundance curve

Bacterial Composition