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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP145069 SRS2529799 SRX3203436 SRR6056668 Colon C57BL/6 Janvier Labs Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015 Netherlands Male Aged V4 |Location:Lumen| 28392 8796

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 658 99.90

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
668.96 659.65 685.00 3.81 0.06 3.84 454

Rarefaction curve

Rank abundance curve

Bacterial Composition