Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP145069 |
SRS2529798 |
SRX3203435 |
SRR6056669 |
Colon |
C57BL/6 |
Janvier Labs |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2015 |
Netherlands |
Male |
|
Aged |
V4 |
|Location:Lumen| |
|
38884 |
8613 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
868 |
99.94 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 876.68 |
868.83 |
891.00 |
3.98 |
0.06 |
4.01 |
495 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
