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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP099935 SRS1981755 SRX2565167 SRR5260625 Feces C57BL/6 Animal Resource Centre Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-09-01 Australia Female 20 Adult V4 63099 9321

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 482 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
521.36 503.39 538.00 4.19 0.05 4.20 625

Rarefaction curve

Rank abundance curve

Bacterial Composition