Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP098151 |
SRS1945770 |
SRX2524248 |
SRR5210792 |
Feces |
C57BL/6 |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Male |
5 |
Juveniles |
V4 |
|
|
77378 |
9240 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
884 |
99.89 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 929.68 |
896.06 |
969.00 |
3.11 |
0.12 |
3.13 |
627 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
