Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP092663 SRS1785934 SRX2329903 SRR4994725 Feces C57BL/6 The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-05-06 Canada Female 7 Juveniles V4 96592 7973

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 328 99.98

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
338.35 330.88 349.00 2.69 0.12 2.70 423

Rarefaction curve

Rank abundance curve

Bacterial Composition