Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP092663 |
SRS1785930 |
SRX2329899 |
SRR4994721 |
Feces |
C57BL/6 |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2015-05-20 |
Canada |
Female |
9 |
Adult |
V4 |
|
|
96797 |
8100 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
434 |
99.97 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 447.80 |
438.23 |
461.00 |
3.61 |
0.06 |
3.61 |
500 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
