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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP092663 SRS1785909 SRX2329878 SRR4994700 Feces C57BL/6 The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-05-06 Canada Female 7 Juveniles V4 89920 8209

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 372 99.97

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
384.50 377.70 398.00 2.83 0.11 2.84 447

Rarefaction curve

Rank abundance curve

Bacterial Composition