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SRS1785898
Summary
Project accession
Sample accession
Experiment accession
Run accession
Sampling location
Genotype
Vendor
Origin
Project accession
Sample accession
Experiment accession
Run accession
Sampling location
Genotype
Vendor
Origin
SRP092663
SRS1785898
SRX2329867
SRR4994689
Feces
C57BL/6
The Jackson Laboratory
Laboratory
Collection date
Country
Sex
Age
Life stage
Region
Metadata
Comment
#Valid reads
#kegg id
Collection date
Country
Sex
Age
Life stage
Region
Metadata
Comment
#Valid reads
#kegg id
2015-05-06
Canada
Female
7
Juveniles
V4
88604
8291
OTU-picking
Method
Cutoff
No. of OTUs found in the sample
Good's coverage of library(%)
Method
Cutoff
No. of OTUs found in the sample
Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2
0.97
420
99.98
Diversity indices
ACE
Chao1
Jackknife
Shannon
Simpson
NPShannon
Phylogenetic diversity
ACE
Chao1
Jackknife
Shannon
Simpson
NPShannon
Phylogenetic diversity
430.06
422.63
441.00
3.19
0.09
3.20
473
Rarefaction curve
JavaScript chart by amCharts
Series
Zoom Out
OTUs
500
-100
-50
0
50
100
150
200
250
300
350
400
450
500
87,717
1
8,860
17,720
26,581
35,441
44,302
53,162
62,022
70,883
79,743
88,604
9,746
19,492
29,239
38,985
48,732
58,478
68,225
77,971
87,717
Reads
Chart
100%
Chart created using amCharts library
Rank abundance curve
JavaScript chart by amCharts
Series
Zoom Out
Relative abundance (log)
0.18
-0.04
-0.02
0
0.02
0.04
0.06
0.08
0.1
0.3
0.25
0.2
0.15
0.05
-0.05
-0.1
81
0
9
18
27
36
45
54
63
72
81
Rank
Chart
100%
Chart created using amCharts library
Bacterial Composition
JavaScript chart by amCharts
