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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP092663 SRS1785888 SRX2329858 SRR4994680 Feces C57BL/6 The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-05-06 Canada Female 7 Juveniles V4 49547 7744

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 301 99.95

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
314.23 306.60 327.00 2.79 0.12 2.80 389

Rarefaction curve

Rank abundance curve

Bacterial Composition