Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP064488 |
SRS1099749 |
SRX1305048 |
SRR2558980 |
Feces |
C57BL/6 |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2014 |
USA |
Female |
7 |
Adult |
V4 |
|
|
17870 |
8802 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
443 |
99.52 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 501.29 |
472.01 |
529.00 |
3.32 |
0.08 |
3.36 |
460 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
