Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP064488 |
SRS1099728 |
SRX1305172 |
SRR2559104 |
Feces |
C57BL/6 |
Taconic Biosciences |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2015 |
USA |
Female |
7 |
Adult |
V4 |
|
|
16875 |
7778 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
399 |
99.72 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 423.83 |
412.12 |
447.00 |
3.44 |
0.09 |
3.47 |
410 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
