Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| ERP110263 |
ERS2716622 |
ERX2801653 |
ERR2792629 |
Stomach |
C57BL/6 |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Male |
8 |
Adult |
V4 |
|
|
93822 |
9718 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
1273 |
99.88 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 1334.37 |
1293.97 |
1389.00 |
3.95 |
0.11 |
3.97 |
1019 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
