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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2716499 ERX2801530 ERR2792506 Jejunum C57BL/6 Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 |Location:Proximal_jejunum| 98050 9511

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 340 99.93

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
383.35 363.72 404.00 2.46 0.14 2.47 467

Rarefaction curve

Rank abundance curve

Bacterial Composition