Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| ERP110263 |
ERS2716320 |
ERX2801351 |
ERR2792327 |
Ileum |
C57BL/6 |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Male |
8 |
Adult |
V4 |
|
|
34877 |
9403 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
584 |
99.75 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 633.89 |
627.50 |
671.00 |
3.84 |
0.09 |
3.86 |
778 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
