Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2716298 ERX2801329 ERR2792305 Ileum C57BL/6 Harlan Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 17309 9319

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 266 99.50

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
353.12 349.07 374.36 2.37 0.18 2.40 460

Rarefaction curve

Rank abundance curve

Bacterial Composition