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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2716220 ERX2801251 ERR2792227 Ileum C57BL/6 Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 96346 9189

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 578 99.90

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
632.80 605.47 676.00 2.82 0.12 2.83 519

Rarefaction curve

Rank abundance curve

Bacterial Composition