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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2716208 ERX2801239 ERR2792215 Duodenum C57BL/6 Harlan Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 15637 10005

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 521 99.41

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
582.68 569.61 614.00 4.55 0.03 4.58 778

Rarefaction curve

Rank abundance curve

Bacterial Composition