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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2716086 ERX2801117 ERR2792093 Duodenum C57BL/6 Harlan Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 95541 9679

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 772 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
818.10 788.44 856.00 3.84 0.05 3.85 823

Rarefaction curve

Rank abundance curve

Bacterial Composition