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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2716027 ERX2801058 ERR2792034 Cecum C57BL/6 Harlan Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 58000 9724

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 740 99.87

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
787.33 764.02 818.00 4.46 0.04 4.48 867

Rarefaction curve

Rank abundance curve

Bacterial Composition