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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2715980 ERX2801011 ERR2791987 Cecum C57BL/6 Harlan Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 51563 9665

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 746 99.82

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
801.28 792.51 841.00 4.08 0.08 4.09 930

Rarefaction curve

Rank abundance curve

Bacterial Composition