Summary
Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
ERP110263 |
ERS2715924 |
ERX2800955 |
ERR2791931 |
Cecum |
C57BL/6 |
Envigo |
Laboratory |
Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Male |
8 |
Adult |
V4 |
|
|
94157 |
9397 |
OTU-picking
Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
CL_OPEN_REF_UCLUST_MC2 |
0.97 |
1003 |
99.89 |
Diversity indices
ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
1064.80 |
1030.83 |
1109.00 |
4.50 |
0.03 |
4.52 |
966 |
Rarefaction curve
Rank abundance curve
Bacterial Composition