Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| ERP110263 |
ERS2715879 |
ERX2800910 |
ERR2791886 |
Colon |
C57BL/6 |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Male |
8 |
Adult |
V4 |
|Location:Distal_colon| |
|
46146 |
9386 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
738 |
99.79 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 795.76 |
787.00 |
837.00 |
4.56 |
0.03 |
4.57 |
911 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
