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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
ERP110263 ERS2715879 ERX2800910 ERR2791886 Colon C57BL/6 Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 8 Adult V4 |Location:Distal_colon| 46146 9386

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 738 99.79

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
795.76 787.00 837.00 4.56 0.03 4.57 911

Rarefaction curve

Rank abundance curve

Bacterial Composition