Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| ERP110263 |
ERS2715828 |
ERX2800859 |
ERR2791835 |
Colon |
C57BL/6 |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Male |
8 |
Adult |
V4 |
|Location:Distal_colon| |
|
26460 |
9979 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
434 |
99.72 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 480.67 |
470.50 |
507.00 |
3.91 |
0.05 |
3.92 |
675 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
