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Bacterial core genes

No. Gene Function Marker ID % of
Existence		 % of
Single-Copyness		 UBCG1 UBCG2 Bac120 BcgTree Campbell
1 rplE 50S ribosomal protein L5 PF00281.18 99.91 99.72 O O X O O
2 rpsH 30S ribosomal protein S8 PF00410.18 99.86 99.66 O O O O O
3 rplB 50S ribosomal protein L2 TIGR01171 99.77 99.63 O O O O O
4 rpsB 30S ribosomal protein S2 TIGR01011 99.83 99.49 O O O O O
5 rpsI 30S ribosomal protein S9 PF00380.18 99.8 99.46 O O O O O
6 rplC 50S ribosomal protein L3 TIGR03625 99.46 99.35 O O O O O
7 rplN 50S ribosomal protein L14 TIGR01067 99.46 99.32 O O X O O
8 rpsL 30S ribosomal protein S12 TIGR00981 99.4 99.17 O O X O O
9 rplW 50S ribosomal protein L23 PF00276.19 99.32 99.15 O O X O O
10 rpsP 30S ribosomal protein S16 TIGR00002 99.32 99.15 O O X O O
11 rplJ 50S ribosomal protein L10 PF00466.19 99.26 99.09 O O O O O
12 rpsJ 30S ribosomal protein S10 TIGR01049 99.29 99.09 O O X O O
13 rpsC 30S ribosomal protein S3 TIGR01009 99.09 98.97 O O O O O
14 rpsO 30S ribosomal protein S15 TIGR00952 99.2 98.95 O O X O O
15 rplM 50S ribosomal protein L13 TIGR01066 99.06 98.89 O O O O O
16 rplS 50S ribosomal protein L19 TIGR01024 98.95 98.78 O O X O O
17 rpsE 30S ribosomal protein S5 TIGR01021 98.86 98.78 O O O O O
18 tsf Elongation factor Ts TIGR00116 98.83 98.75 O O O O O
19 rpmA 50S ribosomal protein L27 TIGR00062 98.83 98.72 O O X O O
20 cgtA GTPase ObgE/CgtA TIGR02729 98.78 98.6 O O O O O
21 infB Translation initiation factor IF-2 TIGR00487 98.72 98.6 O O O O O
22 rplL 50S ribosomal protein L7/L12 TIGR00855 98.83 98.58 O O X O O
23 rplQ 50S ribosomal protein L17 TIGR00059 98.6 98.52 O O O O O
24 rplF 50S ribosomal protein L6 TIGR03654 98.6 98.52 O O O O O
25 rplO 50S ribosomal protein L15 TIGR01071 98.55 98.46 O O O O O
26 rpoA DNA-directed RNA polymerase subunit alpha TIGR02027 99.06 98.46 O O O O O
27 rplV 50S ribosomal protein L22 TIGR01044 98.55 98.43 O O O O O
28 rplU 50S ribosomal protein L21 TIGR00061 98.52 98.41 O O O O O
29 rpsM 30S ribosomal protein S13 TIGR03631 98.49 98.38 O O X O O
30 rpmC 50S ribosomal protein L29 TIGR00012 98.46 98.32 O O X O O
31 rplI 50S ribosomal protein L9 TIGR00158 98.43 98.32 O O O O O
32 rplX 50S ribosomal protein L24 TIGR01079 98.43 98.29 O O O O X
33 ksgA Ribosomal RNA small subunit methyltransferase A TIGR00755 98.35 98.26 O O O O X
34 rpsQ 30S ribosomal protein S17 TIGR03635 98.29 98.15 O O X O O
35 rpsG 30S ribosomal protein S7 TIGR01029 98.26 98.06 O O O O O
36 rpsS 30S ribosomal protein S19 TIGR01050 98.15 98.06 O O X O O
37 rplK 50S ribosomal protein L11 TIGR01632 98.29 98.04 O O O O O
38 rpoB DNA-directed RNA polymerase subunit beta TIGR02013 98.35 98.04 O O O O O
39 rpsF 30S ribosomal protein S6 TIGR00166 98.15 98.04 O O O O O
40 ybeY Endoribonuclease YbeY TIGR00043 98.23 98.01 O O O O O
41 rplT 50S ribosomal protein L20 TIGR01032 98.15 97.98 O O O O O
42 rplP 50S ribosomal protein L16 TIGR01164 98.06 97.98 O O O O O
43 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase TIGR00006 99.35 97.92 X O O O O
44 trmD tRNA (guanine(37)-N(1))-methyltransferase TIGR00088 98.01 97.86 X O O X O
45 dnaX DNA polymerase III subunit gamma TIGR02397 98.66 97.81 O O O O X
46 rpmI 50S ribosomal protein L35 TIGR00001 98.04 97.81 O O X O O
47 rplA 50S ribosomal protein L1 TIGR01169 97.92 97.81 O O O O O
48 rplD 50S ribosomal protein L4 TIGR03953 97.84 97.69 O O O O O
49 frr Ribosome-recycling factor TIGR00496 97.64 97.61 O O O O O
50 engA GTPase Der TIGR03594 97.41 97.41 O O O O X
51 rplR 50S ribosomal protein L18 TIGR00060 97.41 97.32 O O X O O
52 ychF Ribosome-binding ATPase YchF TIGR00092 97.55 97.32 O O O O O
53 nusA Transcription termination/antitermination protein NusA TIGR01953 97.27 97.21 O O O O O
54 pheS Phenylalanine-tRNA ligase alpha subunit TIGR00468 97.38 97.21 O O O O O
55 smpB SsrA-binding protein TIGR00086 97.78 97.15 O O O O O
56 alaS Alanine-tRNA ligase TIGR00344 97.64 97.1 O O O O X
57 tsaD tRNA N6-adenosine threonylcarbamoyltransferase TIGR03723 97.98 97.07 O O O X X
58 prfA Peptide chain release factor 1 TIGR00019 97.07 97.04 O O O O X
59 leuS Leucine-tRNA ligase TIGR00396 97.72 96.98 O O O O X
60 tilS tRNA(Ile)-lysidine synthase TIGR02432 96.92 96.87 O O O O X
61 secY Protein translocase subunit SecY TIGR00967 97.69 96.81 O O O O O
62 lepA Elongation factor 4 TIGR01393 97.64 96.7 O O O O O
63 ffh Signal recognition particle protein TIGR00959 96.7 96.64 O O O O O
64 dnaG DNA primase TIGR01391 97.84 96.5 O O O O O
65 infC Translation initiation factor IF-3 TIGR00168 99.17 96.5 O O O O O
66 ftsY Signal recognition particle receptor FtsY TIGR00064 96.3 96.24 O O O O X
67 truB tRNA pseudouridine synthase B TIGR00431 96.41 96.13 O O O X O
68 rpsD 30S ribosomal protein S4 TIGR01017 99.0 96.13 O O O O O
69 nusG Transcription termination/antitermination protein NusG TIGR00922 95.9 95.81 O O O O X
70 secA Protein translocase subunit SecA TIGR00963 97.86 95.81 O O O O X
71 gmk Guanylate kinase TIGR03263 95.93 95.81 O O O O X
72 fmt Methionyl-tRNA formyltransferase TIGR00460 95.81 95.73 O O O O X
73 pheT Phenylalanine-tRNA ligase beta subunit TIGR00472 95.9 95.73 O O O O O
74 serS Serine-tRNA ligase TIGR00414 98.23 95.59 O O O O O
75 ileS Isoleucine-tRNA ligase 1 TIGR00392 97.44 95.42 O O O O X
76 hisS Histidine-tRNA ligase TIGR00442 98.04 95.39 O O O O X
77 rpsR 30S ribosomal protein S18 TIGR00165 99.46 95.3 O O X O O
78 recA DNA recombination and repair protein TIGR02012 97.01 95.22 O O O O O
79 ruvB holliday junction DNA helicase RuvB TIGR00635 95.5 95.16 X O O X O
80 era GTP-binding protein Era TIGR00436 95.59 95.13 X O O O X
81 rpsT 30S ribosomal protein S20 TIGR00029 95.19 95.05 O O O O O
82 aspS Aspartate-tRNA ligase TIGR00459 96.53 94.99 O X O O O
83 rpoC DNA-directed RNA polymerase subunit beta¡¯ TIGR02386 94.99 94.85 O X O O O
84 coaE Dephospho-CoA kinase TIGR00152 95.13 94.82 O X X O O
85 pyrH UMP kinase TIGR02075 95.59 94.82 X X O X X
86 rpsK 30S ribosomal protein S11 TIGR03632 94.85 94.76 O X O O O
87 uvrC excinuclease ABC subunit C TIGR00194 95.3 94.7 X X O X O
88 uvrB UvrABC system protein B TIGR00631 95.24 94.62 O X O O O
89 yqgF putative transcription antitermination factor YqgF TIGR00250 94.73 94.62 X X O X O
90 secG Protein-export membrane protein SecG TIGR00810 94.68 94.56 O X O O O
91 metG methionine--tRNA ligase TIGR00398 97.41 94.39 X X O X X
92 pgk Phosphoglycerate kinase PF00162.18 98.23 94.36 O X X O O
93 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TIGR00420 97.04 94.36 X X O O X
94 rbfA 30S ribosome-binding factor TIGR00082 94.28 94.22 O X O O O
95 polA DNA polymerase I TIGR00593 94.16 94.08 X X O X X
96 prfB peptide chain release factor 2 TIGR00020 94.02 93.99 X X O X X
97 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase TIGR01087 94.53 93.99 X X O X X
98 ligA DNA ligase TIGR00575 96.24 93.96 O X X O X
99 dnaA Chromosomal replication initiator protein DnaA TIGR00362 94.65 93.94 O X O O X
100 pyrG CTP synthase TIGR00337 94.13 93.85 O X O O O
101 cysS Cysteine-tRNA ligase TIGR00435 97.15 93.79 O X O O X
102 nusB transcription antitermination factor NusB TIGR01951 94.16 93.71 X X O X X
103 argS Arginine-tRNA ligase TIGR00456 97.49 93.71 O X O O O
104 coaD pantetheine-phosphate adenylyltransferase TIGR01510 94.9 93.59 X X O X X
105 rnc Ribonuclease 3 TIGR02191 95.19 93.59 O X O O O
106 gyrB "DNA gyrase, B subunit" TIGR01059 94.53 93.59 X X O O X
107 tig Trigger factor TIGR00115 94.28 93.17 O X O O O
108 yeaZ tRNA threonylcarbamoyl adenosine modification protein YeaZ TIGR03725 93.28 93.14 X X O X X
109 gyrA "DNA gyrase, A subunit" TIGR01063 97.67 93.11 X X O O X
110 tyrS tyrosine--tRNA ligase TIGR00234 98.49 93.08 X X X O X
111 murC UDP-N-acetylmuramate--L-alanine ligase TIGR01082 93.74 93.08 X X O X X
112 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase TIGR00445 94.11 93.02 X X O X X
113 rpmF ribosomal protein bL32 TIGR01031 96.78 92.97 X X X O O
114 mfd transcription-repair coupling factor TIGR00580 92.97 92.97 X X O X O
115 pnp "Polyribonucleotide nucleotidyltransferase, RNA binding domain" PF03726.14 93.0 92.91 X X O X O
116 dnaN "DNA polymerase III, beta subunit" TIGR00663 97.55 92.88 X X O O O
117 ftsZ cell division protein FtsZ TIGR00065 95.73 92.85 X X O X X
118 rimM 16S rRNA processing protein RimM TIGR02273 92.85 92.74 X X O X O
119 recR recombination protein RecR TIGR00615 92.88 92.74 X X O X O
120 grpE GrpE PF01025.19 99.72 92.68 X X O O O
121 clpX "ATP-dependent Clp protease, ATP-binding subunit ClpX" TIGR00382 95.44 92.65 X X O X O
122 typA GTP-binding protein TypA/BipA TIGR01394 92.14 92.06 X X O X X
123 rsfS ribosome silencing factor TIGR00090 92.08 92.03 X X O X X
124 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG TIGR00138 92.08 91.83 X X O X O
125 rpmB ribosomal protein bL28 TIGR00009 97.38 91.69 X X X O O
126 atpG "ATP synthase F1, gamma subunit" TIGR01146 92.94 91.69 X X O X X
127 valS valine--tRNA ligase TIGR00422 91.91 91.43 X X X O O
128 dnaK chaperone protein DnaK TIGR02350 97.75 91.23 X X O O X
129 trmH "RNA methyltransferase, TrmH family, group 3" TIGR00186 91.63 91.14 X X O X X
130 ribF riboflavin biosynthesis protein RibF TIGR00083 90.75 90.6 X X O X O
131 thrS threonine--tRNA ligase TIGR00418 97.55 90.09 X X X O X
132 secE "preprotein translocase, SecE subunit" TIGR00964 90.18 90.03 X X O O O
133 radA DNA repair protein RadA TIGR00416 90.03 89.92 X X O X X
134 hemN putative oxygen-independent coproporphyrinogen III oxidase TIGR00539 90.12 89.86 X X O X X
135 rimP RimP N-terminal domain PF02576.17 89.49 89.35 X X O X X
136 atpD "ATP synthase F1, beta subunit" TIGR01039 94.65 88.87 X X O X X
137 ruvA Holliday junction DNA helicase RuvA TIGR00084 88.13 88.07 X X O X O
138 purB adenylosuccinate lyase TIGR00928 89.41 86.47 X X O X X
139 recN DNA repair protein RecN TIGR00634 85.02 84.99 X X O X X
140 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD TIGR00095 84.91 84.79 X X O X X
141 guaB inosine-5'-monophosphate dehydrogenase TIGR01302 84.82 84.54 X X O X X
142 rseP RIP metalloprotease RseP TIGR00054 83.34 81.98 X X O X X
143 holA "DNA polymerase III, delta subunit" TIGR01128 81.44 80.95 X X O X X
144 proS proline--tRNA ligase TIGR00409 78.99 78.67 X X X O X
145 rpmH ribosomal protein bL34 TIGR01030 75.11 75.0 X X X O X
146 recG ATP-dependent DNA helicase RecG TIGR00643 69.56 69.45 X X O X X
147 glyS "glycine--tRNA ligase, beta subunit" TIGR00211 63.7 63.55 X X X O X
148 rpsA ribosomal protein bS1 TIGR00717 46.27 46.16 X X O X X